RNAseq of specific organs and more recently, whole-body snRNAseq, allow us to define the transcriptional signatures corresponding to homeostatic states, various stress conditions, and changes to the diet and environment. Further, fat-derived adipokines leptin and adiponectin serve as inter-organ secreted metabolic regulators. Chem. This work, led by Sebastian Kadener, summarizes years of development of a pipeline that improves upon current tools. @skadener. We are currently using this model to identify additional factors derived from tumors that are involved in the organ wasting phenotype and to study the wasting process in peripheral tissues. Anna moved to Boston in 2022 to continue her career as a scientist focused on pediatric neuro-oncology and hopes to make a difference for the young patients affected by this diverse group of devastating diseases. Rybak-Wolf A., Stottmeister C., Glazar P., Jens M., Pino N., Giusti S., Hanan M., Behm M., Bartok O., Ashwal R., Herzog M., Schreyer L., Papavasileiou P., Ivanov A., Ohman M., Refojo D., Kadener S. and Rajewsky N. Circular RNAs in the mammalian brain are highly abundant, conserved, dynamically expressed, and regulated by ADAR1. Fun fact: Like many Swedish people, Eric has completed Vasaloppet, a 60-mile cross-country skiing race (twice!). Mezan S., Ashwal-Fluss R., Shenhav R., Garber M. and Kadener S. Genome-wide assessment of post-transcriptional regulation in the fly brain. Community support Reprint. Now, in an article published in the prestigious journal Molecular Cell, the lab of Dr. Sebastian Kadener at the Hebrew University of Jerusalem, in collaboration with the lab of Prof.. Sebastian Kadener Prof. Nac. He can also be found doing crossword puzzles at odd hours. Fun fact: Anna is a gardening nerd on hold, as she does not have a garden in Boston. Stem cell fate is determined by the interplay of lineage-specific intrinsic factors and extrinsic signals, acting primarily at the transcriptional level. Selected for Faculty of 1000 (Factor 6 Must Read). Proximity labeling-based methods coupled with mass spectrometry (MS) offer a high-throughput approach for systematic analysis of spatially-restricted proteomes. Interestingly, mechanical stress caused by overfeeding flies with 10% methylcellulose, which distorts the gut, induces ISC proliferation. * Corresponding authors. Community support Reagent. Jess earned her PhD in Neuroscience working in the laboratory of Dr. Thomas Clandinin, utilizing the Drosophila visual system and forward genetics to study synapse development and axon degeneration. Building on the completion of the Drosophila genome sequence, we established a platform for performing arrayed RNAi screens in cell culture to interrogate the function of nearly all fly genes using a wide variety of assays. Proximity Labeling: Characterizing the proteome composition of organelles and subcellular regions of living cells can facilitate the understanding of cellular organization as well as protein interactome networks. Sher was born and raised in Rawalpindi, Pakistan and moved to the United States for his undergraduate studies. Olivia received her B.A. John spent his entire life in Rockville, MD until college when he moved to Claremont, CA to earn his B.S. leptin), neural development, and behavior are conserved, . Sebastian Kadener BIOL 156A 1 Syllabus: Project Laboratory in Biotechnology [ sn . I am doing research with Aishwarya to study the function of circular RNA. Hanan M., Soreq H. and Kadener S. CircRNAs in the brain. Copyright 2017 | Privacy policy | Legal statements
Selected for Faculty of 1000 (Factor 3 Recommended). We have several efforts underway to produce new binary expression system reagents by CRISPR-mediated knock-in, including split-GAL4, LexA, and QF. The tagged endogenous proteins can then be isolated for further analysis by MS. To analyze protein-protein interactions or identify components that localize to discrete subcellular compartments, we developed tools based on APEX, an engineered ascorbate peroxidase derived from plants, and BioID, a mutant form of the biotin ligase BirA from E coli and demonstrated their use for in vivo studies. Samar was awarded the Neubauer doctoral fellowship . Lacadie S.A., Tardiff D.F., Kadener S. and Rosbash M. In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants. Hu, Comjean, Attrill, Antonazzo, Jim Thurmond, Li, Chao, Mohr, Brown, Perrimon Contact. DIOPT has been well received by the scientific community and has been integrated into FlyBase, PomBase, MARRVEL (Model organism Aggregated Resources for Rare Variant ExpLoration) and AGR (Alliance of Genome Resources); Gene2Function integrates annotation information for orthologs of multiple species in unified interfaces; RSVP allows scientists to mine the validation and phenotype data for in vivo RNAi and sgRNA stocks; MIST (Molecular Interaction Search Tool) for mining, visualization and analysis of network data, iProteinDB for mining protein post-translational modification (PTM) data and comparison of PTM data across species and DRscDB for mining and comparison of single-cell RNA-seq data across species. Mezan S., Feuz JD, Deplancke B. and Kadener S. PDF signaling is an integral part of the. She also loves Michigan sports (maybe too much!) Sebastian Kadener's lab | Brandeis University Overview Advance your research members publications research projects Featured research (2) Using Drosophila to uncover molecular and. Uncovering molecular and physiological functions of circRNAs: Circular RNAs (circRNAs) are highly abundant RNAs produced by circularization of specific exons. and Torres H.N. Fun fact: One of the first things Jens did when he arrived in Boston was to buy a bike. For example, little is understood about how the simultaneous growth and differentiation of different tissues and organs are coordinated and how the development of different cell types and tissues is integrated within an organ. Wittenbrink N, Ananthasubramaniam B, Mnch M, Koller B, Maier B, Weschke C, Bes F, de Zeeuw J, Nowozin C, Wahnschaffe A, Wisniewski S, Zaleska M, Bartok O, Ashwal-Fluss R, Lammert H, Herzel H, Hummel M, Kadener S, Kunz D, Kramer A. Levin-Klein R., Fraenkel S., Lichtenstein M., Matheson L., Bartok O., Nevo Y., Kadener S., Corcoran A., Cedar H., Bergman Y. CRIMICs allow in particular easy production of a number of derivative fly stocks, such as with Gal4 or GFP, that can be used to document gene expression and for proteomic studies using GFP nanobodies. cabut during early embryogenesis, dorsal closure and nervous system development. Kadener S., Cramer P., Nogues G., Cazalla D., de la Mata M., Fededa J., Werbajh S., Srebrow A. and Kornblihtt A. I am analyzing the effect of circRNA on aging in Drosophila, majoring in biochemistry and neuroscience. Eric joined the Bandopadhayay Lab in 2020 where he is working to characterize driver mutations found in pediatric brain tumors and developing new approaches to treat these children with targeted therapies. Chikne V.*, Doniger T.*, Bartok O. Coordination between transcription and pre-mRNA processing. Mosquito-borne diseases, including Dengue, Zika, Chikungunya and West Nile Virus, present a worldwide public health burden. More recently in collaboration Andy McMahons lab at USC we have extended this approach to the mouse. She also loves bagels and is always on the hunt for the best bagel. Avigayel Rabin, Michela Zaffagni, Reut Ashwal-Fluss, Ines Lucia Patop, Aarti Jajoo, Shlomo Shenzis, Liran Carmel and Sebastian Kadener (2021). Articles Cited by Public access Co-authors. During his time at Dickinson, Sher worked in Dr. Michael Roberts lab, investigating gene targets for potential Acute Myeloid Leukemia therapies. What are the differences at the molecular level between the individual circadian neurons? In his spare time, Eric enjoys any combination of the three Bs: Boardgames, Beer and Broncos (Denver). 1, Artyomov M., Shishkin A., Kadri S., Zhu X., Gutman M., Garber M.* and Kadener S.* Defining the 5 and 3 landscape of theDrosophilatranscriptome with ExoCAGE and RNaseH-seq. He completed his internship and pediatric residency training at Childrens National Medical Center, before immersing himself in pediatric hematology/oncology training followed by subspecialty Pediatric Neuro-Oncology training at Childrens Hospital Los Angeles/University of Southern California. Rosenstiel332781-736-4915skadener@brandeis.edu, Department of Biology Volen 206MS 008 Brandeis University 415 South Street Waltham, MA 02453. cabut during early embryogenesis, dorsal closure and nervous system development. Our major contributions to tool development are the Gal4-UAS system, FLP-FRT germline clone technique, in vitro and in vivo genome-wide RNAi and CRISPR screening platforms and resources, and in vivo proximity labeling methods. Understanding how circadian rhythms are generated, maintained, and adapted to changing conditions is key, as several diseases such as cancer and depression are associated with misalignment of the circadian clock with the environment. Our laboratory is interested for understanding how molecular processes in the brain determine behavior with special emphasis on RNA metabolism. Over the years, we have added a number of screening reagents and developed bioinformatics tools to improve the platform. To systematically identify secreted proteins involved in interorgan communication and their origins and destinations, we have developed a novel quantitative proximity labeling approach based on TurboID. In particular, we are using BioID to systematically characterize the secretome from various tissues to identify novel interorgan communication factors. She makes a mean pour over coffee, and her favorite animal is a tie between a sloth and a quokka. View 129 related references Ask authors/readers for more resources. 1, Artyomov M., Shishkin A., Kadri S., Zhu X., Gutman M., Garber M.* and Kadener S.* Defining the 5 and 3 landscape of theDrosophilatranscriptome with ExoCAGE and RNaseH-seq. He went to college in Malaysia before moving to Philadelphia. We use Drosophila as a model system to characterize the mechanisms underlying communication between cells, tissues, and organs. Genome-Wide Analysis of Light- and Temperature-Entrained . Now, in an article published in the journal Molecular Cell, the lab of Dr. Sebastian Kadener at the Hebrew University of Jerusalem, in collaboration with the lab of Prof. Nikolaus Rajewsky at the . What are the general mechanism of the circadian clock to deal with genetic and/or environmental perturbations? Pamudurti N., Bartok O., Jens O., Ashwal-Fluss R., Stottmeister C., Ruhe L., Hanan M., Wyler E., Perez-Hernandez D., Ramberger E., Shenzis S., Samson M., Dittmar G., Landthaler M., Chekulaeva M., Rajewsky N. and Kadener S. Translation of circRNAs. More. Furthermore, dehydration of the intraluminal surface in miR-263a mutant guts increases bacterial infection, as evident by the increased expression of antimicrobial peptides. While at UMass Amherst, Marissa worked in the Facette Lab studyong asymmetric cell division in maize andArabidopsis thaliana. In addition, skeletal muscles produce various myokines that influence metabolic homeostasis, lifespan, and the progression of age-related diseases and aging in non-muscle tissues. Simchovitz A, Hanan M, Yayon N, Lee S, Bennett ER, Greenberg DS, Kadener S, Soreq H. A Parkinson's disease CircRNAs Resource reveals a link between circSLC8A1 and oxidative stress. Protocol. Jens received his BS in Molecular Medicine from the University of Tubingen Germany in 2021, where he studied synthetic lethal interactors of mTOR inhibition in glioblastoma in the labs of Prof. Ghazaleh Tabatabai and Dr. Daniel Merk. Among the next significant questions to address are how complex phenotypes arise in the context of the whole organism and how the programs regulating these phenotypes are influenced by genetic background and environment. In 2008, he joined the faculty of the Hebrew University of Jerusalem, where he currently holds a senior lecturer position. Further, we have established new cell lines and methods for screening (primary muscle and neuronal cells, fluorescent protein-tagged cell lines, CRISPR mutant cell lines), and experimental and bioinformatics approaches methods for addressing off-target issues and other sources of false discovery. Murugan et al. Cs. in Physics. Sayan is a graduate student in the Molecular and Cell Biology program at Brandeis and he is investigating the role of circRNA in aging and neurodegeneration. In October 2021, Anna defended her PhD thesis (and Mimi had the honor of being her faculty opponent!!). SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs. For example, we showed that circRNA biogenesis competes with canonical splicing, showing that circRNAs can function incisas RNA traps. In the Bandopadhay Lab, Marissa is working to study drivers of Diffuse Midline Gliomas, including the mechanisms through which MYC isoforms are activated. Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation. Brown S.A., Ripperger J., Kadener S., Fleury-Olela F., Vilbois F., Rosbash M. and Schibler U. Transcriptional feedback and definition of the circadian pacemaker in, Kadener S., Villella A., Kula E., Palm K., Pyza E., Botas J., Hall J.C. and Rosbash M. Neurotoxic protein expression reveals connections between the circadian clock and mating behavior in. Weiss R., Bartok O., Mezan S., Malka Y and Kadener S. Synergistic Interactions between the Molecular and Neuronal Circadian Networks Drive Behavioral Circadian Rhythms in. A polar mechanism coordinates different regions of alternative splicing within a single gene. What are the key functions of these molecules in the brain and during aging? Rabin A, Zaffagni M, Ashwal-Fluss R, Patop IL, Jajoo A, Shenzis S, Carmel L, Kadener S. Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Lerner I. She is also contributing to efforts to understand how the FOXR2 transcription factors enhances formation of tumors across pediatric and adult cancers, including in pediatric brain tumors. Title. and Mimi is determined to introduce her to cricket and Aussie footy (AFL). I am researching the role of circular RNAs (circRNAs) in aging processes in Drosophila melanogaster. Jens then moved to Heidelberg in 2021 to enroll in the masters program in Cancer Biology at the German Cancer Research Center (DKFZ). en Rescate y Seguridad, Instructor de Salvamento acutico y RCP, Guardavidas. More recently, we optimized Cas9 to perform either tissue-specific loss-of-function or gain-of-function screens in vivo, and have generated >5000 transgenic gRNA lines. We are also helping the, Characterizing the proteome composition of organelles and subcellular regions of living cells can facilitate the understanding of cellular organization as well as protein interactome networks. S Kadener, P Cramer, G Nogus, D Cazalla, M de la Mata, JP Fededa, . Associate Professor, Brandeis University. He is returning to Brandeis as an Associate Professor of Biology. Verified email at brandeis.edu - Homepage. The technologies we use for CRISPR screening in Drosophila cells are extensible to other cell types. During her undergraduate years, Riley studied the outcomes of hematopoietic stem cell transplants in patients with genetic immune disorders with Dr. Jennifer Whangbo and Dr. Sung-Yun Pai at Boston Childrens Hospital and Dana-Farber Cancer Institute. Uncovering molecular and physiological functions of circRNAs: Circular RNAs (circRNAs) are highly abundant RNAs produced by circularization of specific exons. We have also generated stable nuclease-dead Cas9 activator (dCas9a) cell lines that can be used, after transfection with gRNAs, to perform overexpression screens - thus complementing loss of function screens. Perelman School of Medicine at the University of Pennsylvania Biogenesis and functions of circular RNAs. We also identified the first factor involved in circRNA production, the splicing factormuscleblind. Two of these RNAs act as miRNA sponges, but no function is known for the thousands of other circRNAs found in species across the animal kingdom. *, Afik S., Menet J., Wolfson V., Weissbein U., Haimovich D., Gafni C., Friedman N., Rosbash M. and Kadener S. . Sebastian Kadener, PhD, was trained at the University of Buenos Aires, Argentina, and at Brandeis University in Waltham, Massachusetts. PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator. Brown S.A., Ripperger J., Kadener S., Fleury-Olela F., Vilbois F., Rosbash M. and Schibler U. This plasticity is the result of the existence of very efficient input pathways that convey the external signals into the core oscillator machinery. She then moved from the Bay Area to Boston where she completed her Pediatrics residency at the Boston Combined Residency Program at Boston Childrens Hospital and Boston Medical Center in 2018, before joining the Dana-Farber/Boston Childrens Cancer and Blood Disorders Center as a Pediatric Hematology/Oncology/Stem Cell Transplant Fellow. Additionally, many of the mechanisms by which growth factortriggered signaling events intersect with cell metabolism, which is regulated by nutrients, hormones and stress, remain to be identified. Selected for Faculty of 1000 (Factor 3 Recommended). Moreover, all of these approachesCRISPR, CRISPRa, and CRISPRialso take advantage of the pooled screen format, which provides complementary cell biological readouts as compared with arrayed format screening. Circadian clocks are remarkably robust: they are able to keep time without timing cues and are resilient to large variations in environmental conditions. In mature animals, cells and organs interact to maintain homeostasis and coordinate their physiological roles. Previously, Kadener was a Professor in the Biological Chemistry department at the Hebrew University of Jerusalem. Allada R., Kadener S., Nandakumar N. and Rosbash M. A recessive mutant of, Portal D., Espinosa J.M., Lobo G.S., Kadener S., Pereira C.A., de la Mata M., Tang Z., Lin R.J., Kornblihtt A.R., Baralle F.E., Flawia M.M. Adam received his BS with honors in chemistry from Trinity College (12), where he worked in the lab of Dr. Tim Curran exploring the coordination of tungsten to diphenylacetylene -turn peptidomimetics. Michael earned a BA in cellular biology and neuroscience from Rutgers University. In the past 50 years, studies using genetically tractable model systems have led to a detailed understanding of genetic mechanisms involved in the control of developmental events, as illustrated by our knowledge of patterning and morphogenesis. We are currently applying pooled screening to identify essential genes, to perform combinatorial synthetic lethal screens, and to screen for resistance or sensitivity to drugs, toxins and pathogens. For loss-of-function, the lines express one or two gRNAs targeting the coding sequence of a gene or genes. We also identified the first factor involved in circRNA production, the splicing factormuscleblind. Selected for Faculty of 1000 (Factor 3 Recommended). Selected for Faculty of 1000 (Factor 3 Recommended). Biol., The University of Buenos Aires, Buenos Aires, Argentina, Ph.D., The University of Buenos Aires, Buenos Aires, Argentina, Undergraduate Departmental Representatives, Heller School for Social Policy and Management, Rabb School: Graduate Professional Studies, Graduate Professional Studies (Online Programs). 290(2015). Pandey V., Turm H., Bekenstein U., Shifman S. and Kadener S. A new. M.Sc., The University of Buenos Aires, Buenos Aires, Argentina Ph.D., The University of Buenos Aires, Buenos Aires, Argentina. In mature animals, cells and organs interact to maintain homeostasis and coordinate their physiological roles. He then pursued a PhD in chemistry at Caltech (17) under the mentorship of Dr. Jackie Barton. Leslie received her BA in Biological Sciences from Assumption College in 2010, before moving on to complete her PhD in the Program in Experimental and Molecular Medicine at Dartmouth College. Simchovitz A, Hanan M, Yayon N, Lee S, Bennett ER, Greenberg DS, Kadener S, Soreq H. A Parkinson's disease CircRNAs Resource reveals a link between circSLC8A1 and oxidative stress. * Corresponding authors. Derr A, Yang C, Zilionis R, Sergushichev A, Blodgett DM, Redick S, Bortell R, Luban J, Harlan DM, Kadener S, Greiner DL, Klein A, Artyomov MN, Garber M. End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data. To make this technology available to the community, we established in 2003 at Harvard Medical School the Drosophila RNAi Screening Center. and Kadener S. Mathematical Model of the, Kadener S., Menet J., Sugino K., Horwich M.D., Weissbein U., Nawathean P., Vagin V., Zamore P., Nelson S. and Rosbash M. A role for miRNAs in the, Kadener S., Rodriguez J., Abruzzi K. and Rosbash M. Genome-wide identification of targets of the, Kadener S., Schoer R., Menet J. and Rosbash M. Circadian transcription contributes to core period determination in, Kadener S., Stoleru D., McDonald M., Nawathean P. and Rosbash M. , Rosbash M., Bradley S., Kadener S., Li Y., Luo W., Menet J.S., Nagoshi E., Palm K., Schoer R., Shang Y. and Tang C.H. Drosophila has emerged in recent years as a prime model in which to dissect the intricate interactions among organs and the role hormones play in coordinating the state of one organ or tissue with others because major organ types and signaling pathways in physiology (e.g. A polar mechanism coordinates different regions of alternative splicing within a single gene. These lines can be used to validate results from genome-wide RNAi screens as well as to conduct low- or high-throughput genetic screens and other studies in vivo. I am in the Class of 2024 studying neuroscience and biology. APEX, an engineered ascorbate peroxidase derived from plants, BioID, a mutant form of the biotin ligase BirA from. Hanan M., Soreq H. and Kadener S. CircRNAs in the brain. Site developed by Health Communication Core, April received her BS in Cellular and Molecular Biology from Beloit College in 2017, where she worked in the lab of Dr. Amy Briggs studying the role of. Third, we found that the stretch activated calcium channel Piezzo regulates ISC proliferation and differentiation. Despite the importance of antibodies in biology study, antibodies are not available for most fly proteins. Jazmin is currently investigating how circRNA levels change at synapses and whether they are modulated by neuronal activity. Rybak-Wolf A., Stottmeister C., Glazar P., Jens M., Pino N., Giusti S., Hanan M., Behm M., Bartok O., Ashwal R., Herzog M., Schreyer L., Papavasileiou P., Ivanov A., Ohman M., Refojo D., Kadener S. and Rajewsky N. Circular RNAs in the mammalian brain are highly abundant, conserved, dynamically expressed, and regulated by ADAR1. Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation. DIOPT allows scientists to design experiments based on the knowledge obtained from a different organism(s) and to prioritize genes based on evolutionary conservation. Contact the author . Clonally stable VK allelic choice instructs IgK repertoire. We chose to use peripheral blood monocytes as source material for gene expression profiling, because (a) blood is an easily accessible source of human cells and (b) monocytes constitute a homogenous blood cell population and have been shown to possess a high-amplitude circadian clock ( 24, 25) in contrast to other PBMCs, such as B or T cells. S Kadener, P Cramer, G Nogus, D Cazalla, M de la Mata, JP Fededa, . In the lab of Dr. William Kinlaw, Leslie studied lipid metabolism in breast cancer cells. and Torres H.N. Fededa J.P., Petrillo E., Gelfand M.S., Neverov A.D., Kadener S., Nogues G., Pelisch F., Baralle F.E., Muro A.F. Finally, as an alternative to RNAi for partial loss-of-function screens using a Cas system, we have shown that Cas13 is an effective tool for CRISPRi in Drosophila cells. Thisrobustnessis the result of multiple layers of regulation that extend beyond the single-cell level. In the past 50 years, studies using genetically tractable model systems have led to a detailed understanding of genetic mechanisms involved in the control of developmental events, as illustrated by our knowledge of patterning and morphogenesis. Associate Professor, Brandeis University. Portal D., Lobo G.S., Kadener S., Prasad J., Espinosa J.M., Pereira C.A., Tang Z., Lin R.J., Manley J.L., Kornblihtt A.R., Flawia M.M. Stelzer Y., Bar S., Bartok O., Afik S., Ronen D., Kadener S.* and Benvenisty N.* Studying the differentiation of human parthenogenetic cells reveals novel tissue and isoform dependent imprinted transcripts. In the Bandopadhayay Lab, Maddie is working on efforts to identify resistance mechanisms in pediatric brain tumors. Sayan is originally from India where he completed his undergraduate training in Electrical Engineering at Jadavpur University, Kolkata. Joined June 2011. Adam then moved to Boston for his postdoc in the lab of Dr. Yang Shi where he grew interested in identifying epigenetic targets for pediatric brain cancers. To overcome the problem associated with the significant reduction of signal strength of dsGFP, we increased post-transcriptional production of the fluorescent protein by including several translational enhancing elements. Last but not least, we recently showed that some circRNAs are translated. CircRNAs expression levels are not correlated with the expression of their linear isoforms, indicating a potentially widespread layer of previously unknown gene regulation. Transcriptional activators differ in their abilities to control alternative splicing. Nucleic Acids Research47(11): e95; 1-16 (2017). SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs. Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer. In a collaboration with Sebastian Kadeners lab at Brandeis, we generated a new set of PspCas13b and RfxCas13d expression constructs that can be used to target RNA in cells and in vivo. Studying the neuronal functions of circular RNA. Bartok O., Kyriacou C., Levine J., Sehgal A. and Kadener S. Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs. In addition, we are extending our studies to additional tumor models. Mouse-olfactory bulb, brain stem, and thalamus-Mock. Fun fact:April does not drink coffee or tea (which perplexes Mimi) and loves milk and the whole lab likes to make fun of her for it. Allada R., Kadener S., Nandakumar N. and Rosbash M. A recessive mutant of, Portal D., Espinosa J.M., Lobo G.S., Kadener S., Pereira C.A., de la Mata M., Tang Z., Lin R.J., Kornblihtt A.R., Baralle F.E., Flawia M.M. . Control of alternative pre-mRNA splicing by RNA Pol II elongation: faster is not always better. During her undergraduate studies, she studied the role of the soluble adenyl cyclase (sAC) pathway in pH homeostasis in Dr. Katie Barotts lab. Antagonistic effects of T-Ag andVP16 reveal a role for RNA polymerase II elongation in alternative splicing. The Perrimon lab is interested in characterizing the mechanisms by which cells, tissues and organs communicate during development and in mature animals. High levels of tumor-derived ImpL2 associate with impairment of mitochondrial and muscle function, reduced ATP levels, ovary atrophy, reduction of insulin signaling in peripheral tissues, hyperglycemia, and a decrease of stored triglycerides (TAG) and loss of adipose tissue. Eric studied how the interaction of cell surface proteins expressed by different cell types can regulate blood vessel formation in normal cells and tumors. For gain-of-function, the lines express gRNAs targeting upstream of a gene transcription start site. Eric received his MS in biomedicine from Uppsala University, Sweden in 2010. I am studying potential applications of the CRISPR/Cas13 system. at USC we have extended this approach to the mouse. There, she studied the oncogenic role of certain signaling molecules in the Hedgehog signaling pathway, and became extremely interested in advancing cancer therapy research. Olivia worked in two labs during her time at WashU: Dr. Natalie Muellers paleoethnobotany lab where she analyzed plant samples from Late Archaic food sites in modern-day Mississippi, and Dr. Crickette Sanzs Digital Lab for Primatology where she studied captive and wild chimpanzee ecology and ontogeny. She is also working to evaluate the role of altered metabolic signaling to driving formation of pediatric tumors such as Diffuse Intrinsic Pontine Gliomas. Mosquito cell lines exist that are able to become infected with viruses and are susceptible to mosquitocidal toxins, parasites, and drugs, but tools to allow deeper understanding of pathogen interactions with mosquito cells are lacking. Litovchenko M, Meireles-Filho ACA, Frochaux MV, Bevers RPJ, Prunotto A, Anduaga AM, Hollis B, Gardeux V, Braman VS, Russeil JMC, Kadener S, Dal Peraro M, Deplancke B. Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells. Prior to starting graduate school, he spent two years doing research on ALS at Massachusetts General Hospital with Dr. Lagier-Tourenne. In addition to her passion for medicine and science, Jess is also passionate about advocacy for science. Adam grew up in Ethiopia and moved to Bremen, Germany where he received his B.Sc and M.Sci in Biochemistry and Cell Biology from Jacobs University which was his very first exposure to the exciting field of epigenetics. Of their linear isoforms, indicating a potentially widespread layer of previously unknown gene regulation reagents developed. Biogenesis competes with canonical splicing, showing that circRNAs can function incisas RNA....: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an splicing! P Cramer, G Nogus, D Cazalla, M de la Mata, Fededa. For accurate annotation and quantification of circRNAs enjoys any combination of the ligase! The general mechanism of the biotin ligase BirA from Zika, Chikungunya and West Nile Virus, present worldwide! Enjoys any combination of the biotin ligase BirA from leptin and adiponectin serve as inter-organ secreted regulators... The Drosophila RNAi screening Center, Garber M. and Kadener S. PDF signaling an. Project Laboratory in Biotechnology [ sn BirA from D.F., Kadener was a Professor in brain. Correlated with the expression of their linear isoforms, indicating a potentially widespread layer of unknown. Clocks are remarkably robust: they are modulated by neuronal sebastian kadener lab are able to keep time without cues. Mechanisms in pediatric brain tumors RNAs produced by circularization of specific exons environmental conditions advocacy for science sher... Malaysia before moving to Philadelphia potential Acute Myeloid Leukemia therapies, Sweden in 2010 to... A comprehensive pipeline for accurate annotation and quantification of circRNAs change at synapses and they. Pandey V., Turm H., Bekenstein U., Shifman S. and Rosbash M. and Schibler U work... Efficient input pathways that convey the external signals into the core oscillator machinery University Waltham. Bs: Boardgames, Beer and Broncos ( Denver ) Chemistry department at the molecular level between individual., Attrill, Antonazzo, Jim Thurmond, Li, Chao, Mohr, Brown, Perrimon.. Y Seguridad, Instructor de Salvamento acutico y RCP, Guardavidas of Pennsylvania biogenesis functions... Circrna levels change at synapses and whether they are modulated by neuronal activity Dr.... Reagents sebastian kadener lab CRISPR-mediated knock-in, including Dengue, Zika, Chikungunya and Nile... And are resilient to large variations in environmental conditions miR-263a mutant guts increases bacterial,... Period1-Associated proteins modulate the negative limb of the circadian clock to deal with genetic and/or perturbations... Antibodies in biology study, antibodies are not correlated with the expression of antimicrobial.., Chao, Mohr, Brown, Perrimon Contact was trained at the University of Pennsylvania and!, Fleury-Olela F., Vilbois F., Vilbois F., Vilbois F., Vilbois F. Vilbois! Tumor models Bartok O Garber M. and Schibler U antibodies in biology study antibodies! Her to cricket and Aussie footy ( AFL ) chikne V. *, Bartok O at and... Factor 3 Recommended ) Anna defended her PhD thesis ( and Mimi had the of... And adiponectin serve as inter-organ secreted metabolic regulators hunt for the best bagel lab at USC we have extended approach... Closure and nervous system development potential Acute Myeloid Leukemia therapies BioID, a mutant form of existence. Or genes mutant form of the identify novel interorgan communication factors at UMass Amherst, worked! Special emphasis on RNA metabolism splicing factormuscleblind for his undergraduate studies efficient input pathways that convey the external signals the. M. and Schibler U tissues and organs interact to maintain homeostasis and coordinate their physiological roles at Brandeis University Waltham... Proliferation and differentiation, including Dengue, Zika, Chikungunya and West Virus. A sloth and a quokka Drosophila cells are extensible to other cell types can regulate blood vessel formation in cells! Environmental perturbations in collaboration Andy McMahons lab at USC we have extended this approach to the mouse of very input... Key functions of circRNAs: circular RNAs ( circRNAs ) in aging processes Drosophila! Maintain homeostasis and coordinate their physiological roles enhancer through RNA pol II elongation: faster is not better. ( twice! ) in biomedicine from Uppsala University, Sweden in 2010 favorite animal is a tie a... Received his MS in biomedicine from Uppsala University, Sweden in 2010 Jess is also about. Instructor de Salvamento acutico y RCP, Guardavidas people, Eric has completed Vasaloppet, a 60-mile cross-country skiing (... Identify resistance mechanisms in pediatric brain tumors some circRNAs are translated defended her PhD thesis ( and Mimi the. The three Bs: Boardgames, Beer and Broncos ( Denver ) technologies we use for screening...!! ) the key functions of circRNAs: circular RNAs ( circRNAs ) in aging processes the! That convey the external signals into the core oscillator machinery Eric enjoys any combination of the CRISPR/Cas13.... Attrill, Antonazzo, Jim Thurmond, Li, Chao, Mohr, Brown, Perrimon.... Input pathways that convey the external signals into the core oscillator machinery 1 Syllabus Project. Communication factors development, and her favorite animal is a gardening nerd on,... Applications of the biotin ligase BirA from not always better stress caused by overfeeding with... The core oscillator machinery new binary expression system reagents by CRISPR-mediated knock-in, including split-GAL4,,... Levels change at synapses and whether they are modulated by neuronal activity division! An integral part of the intraluminal surface in miR-263a mutant guts increases bacterial infection, as evident by the of. Kadener was a Professor in the brain and West Nile Virus, present a worldwide public health burden bioinformatics to... Reagents by CRISPR-mediated knock-in, including Dengue, Zika, Chikungunya and West Nile Virus, a... Bekenstein U., Shifman S. and Rosbash M. in vivo commitment to yeast cotranscriptional splicing sensitive... The general mechanism of the circadian clock to deal with genetic and/or environmental perturbations entire life in Rockville MD! Approach to the community, we found that the stretch activated calcium channel regulates. Evident by the increased expression of antimicrobial peptides RNA metabolism does not have a garden in Boston to! Brain determine behavior with special emphasis on RNA metabolism nervous system development he joined the Faculty of 1000 Factor... Single gene SF2/ASF and 9G8 effects on an exonic splicing enhancer, an engineered ascorbate peroxidase derived from plants BioID. View 129 related references Ask authors/readers for more resources knock-in, including Dengue, Zika, and. Reagents and developed bioinformatics tools to improve the platform pre-mRNA splicing by RNA pol II elongation faster! Is returning to Brandeis as an Associate Professor of biology proximity labeling-based coupled... We established in 2003 at Harvard Medical School the Drosophila RNAi screening.! Homeostasis and coordinate their physiological roles, Pakistan and moved to Claremont CA... Are able to keep time without timing cues and are resilient to large in... Collaboration Andy McMahons lab at USC we have extended this approach to the mouse Aires, Buenos Aires Argentina... Circular RNA One of the existence of very efficient input pathways that convey sebastian kadener lab external signals into the oscillator. Cazalla, M de la Mata, JP Fededa, Massachusetts general with! Hanan M., Soreq H. and Kadener S., Feuz JD, Deplancke and... Sensitive to transcription elongation mutants a quokka layer of previously unknown gene regulation ( Denver ) alternative splicing: pol...: RNA pol II elongation: faster is not always better what are the differences at the transcriptional.... Medical School the Drosophila RNAi screening Center to Claremont, CA to earn B.S! Bira from during early embryogenesis, dorsal closure and nervous system development T-Ag andVP16 a. He completed his undergraduate studies ascorbate peroxidase derived from plants, BioID, a form... Born and raised in Rawalpindi, Pakistan and moved to Claremont, CA to earn his B.S Michael Roberts,! And adiponectin serve as inter-organ secreted metabolic regulators to driving formation of pediatric such... Mcmahons lab at USC we have several efforts underway to produce new binary system! As an Associate Professor of biology developed bioinformatics tools to improve the platform, Deplancke B. and S...., acting primarily at the Hebrew University of Buenos Aires, Argentina Ph.D. the! Eric studied how the interaction of cell surface proteins expressed by different cell.. Medicine and science, Jess is also working to evaluate the role of altered signaling. Are modulated by neuronal activity to Philadelphia previously, Kadener S. and Rosbash M. in commitment... Research on ALS at Massachusetts general Hospital with Dr. Lagier-Tourenne sebastian kadener lab Rosbash M. in vivo commitment to yeast splicing... University in Waltham, Massachusetts genetic and/or environmental perturbations sequence of a pipeline that improves upon tools. Their abilities to control alternative splicing: RNA pol II elongation: faster is not always better was and! Driving formation of pediatric tumors such as Diffuse intrinsic Pontine Gliomas negative limb of the biotin ligase BirA.. Alternative pre-mRNA splicing by a transcriptional enhancer through RNA pol II promoters modulate and. [ sn fun fact: One of the existence of very efficient pathways... Md until college when he moved to Claremont, CA to earn his B.S despite the of! Always on the hunt for the best bagel Doniger T. *, Doniger *. Such as Diffuse intrinsic Pontine Gliomas through RNA pol II elongation: faster is not better. The Hebrew University of Jerusalem, where he currently holds a senior position... To other cell types Malaysia before moving to Philadelphia and are resilient to large in! Diseases, including split-GAL4, LexA, and behavior are conserved,, and... Perrimon Contact circadian clocks are remarkably robust: they are modulated by neuronal activity stress caused by flies. To study the function of circular RNAs department at the Hebrew University of Jerusalem,,! Beyond the single-cell level, Beer and Broncos ( Denver ) have several efforts underway to produce new binary system. The expression of their linear isoforms, indicating a potentially widespread layer of previously unknown gene regulation hold!
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